PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g02560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 442aa    MW: 48444.8 Da    PI: 6.7437
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g02560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.7e-13194244155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Vradi04g02560.1 194 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 244
                      89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.86385159IPR001471AP2/ERF domain
SMARTSM003808.9E-8108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-9125159IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6126159IPR016177DNA-binding domain
SuperFamilySSF541717.19E-17194253IPR016177DNA-binding domain
CDDcd000182.86E-26194254No hitNo description
PfamPF008471.1E-8194244IPR001471AP2/ERF domain
SMARTSM003807.6E-33195258IPR001471AP2/ERF domain
PROSITE profilePS5103215.527195252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-16195252IPR001471AP2/ERF domain
PRINTSPR003674.4E-6196207IPR001471AP2/ERF domain
PRINTSPR003674.4E-6234254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLDLNLNADS TQSQDSVMLL DKFPEASSGT SNSSVVNAEG SSNEDSCSTR AGDVFTFNFG  60
ILKVEGADDV VVSATKELFP ASAENWQGQS STSSFQDRKS LVDLSLDRQN GEVKVVQVQQ  120
QPQVKKSRRG GFDTAHAAAR AYDRAAIKFR GLDADINFNL VDYEEDLKQM KTLSKEEFVH  180
ILRRHSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI  240
KCNGREAVTN FEPSTYDSEM KPEAINEGGN HDLDLNLGIA TPGHGPKENI GHLQFQQVPY  300
STHPGRISRM ETNFSPVIGD PSLKRHVVTE ERPSVWNAAH YTFFPNLERA ERIGIDPSKG  360
VPNWAWQTHG QVTASPVPPF STAASSGFSI SATFPPNAIF PTKSVNSIPQ NLCFTSASAP  420
GSNTPQFYYE VKSTQAPSRP I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497966.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK034e-81RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0L9UNS60.0A0A0L9UNS6_PHAAN; Uncharacterized protein
STRINGGLYMA13G40470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-92related to AP2.7